Overview

Reference-proteome analysis workspace — sequence retrieval, phylogenetics, and domain profiling for CGLab.

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Latest version — most recent build

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Analysis modules

Fetch by Pfam & taxon, align with MAFFT, infer an ML tree, and explore it interactively with domain shapes.

Presence/absence heatmaps, plus high-resolution subclade profiles from partitioned gene trees.

Retrieve by taxonomy, GO, or Pfam; run HMM searches; look up domain coordinates and branch sequences.

Family	Leaves	Method	Built	Status
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Every analysis you launch is listed here — regardless of the output path you choose.